PoplarV1, Main, Exploration, bibRecord, 003B37

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.

Identifieur interne : 003B37 ( Main/Exploration ); précédent : 003B36; suivant : 003B38

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.

Auteurs : Abdelali Barakat [États-Unis] ; Kerr Wall ; Jim Leebens-Mack ; Yunjiao J. Wang ; John E. Carlson ; Claude W. Depamphilis

Source :

The Plant journal : for cell and molecular biology [ 0960-7412 ] ; 2007.

RBID : pubmed:17635767

Descripteurs français

English descriptors

KwdEn :
- Arabidopsis (genetics), Arabidopsis (metabolism), Base Sequence (MeSH), Cloning, Molecular (MeSH), Conserved Sequence (MeSH), Eschscholzia (genetics), Eschscholzia (metabolism), Flowers (genetics), Flowers (metabolism), Magnoliopsida (genetics), Magnoliopsida (metabolism), MicroRNAs (classification), MicroRNAs (genetics), MicroRNAs (metabolism), Molecular Sequence Data (MeSH), Plant Leaves (genetics), Plant Leaves (metabolism), Plant Roots (genetics), Plant Roots (metabolism), Plant Stems (genetics), Plant Stems (metabolism), Populus (genetics), Populus (metabolism), Sequence Analysis, RNA (MeSH).
MESH :
- chemical , classification : MicroRNAs.
- genetics : Arabidopsis, Eschscholzia, Flowers, Magnoliopsida, MicroRNAs, Plant Leaves, Plant Roots, Plant Stems, Populus.
- metabolism : Arabidopsis, Eschscholzia, Flowers, Magnoliopsida, MicroRNAs, Plant Leaves, Plant Roots, Plant Stems, Populus.
- Base Sequence, Cloning, Molecular, Conserved Sequence, Molecular Sequence Data, Sequence Analysis, RNA.

Abstract

MicroRNAs (miRNAs) negatively control gene expression by cleaving or inhibiting the translation of mRNA of target genes, and as such, they play an important role in plant development. Of the 79 plant miRNA families discovered to date, most are from the fully sequenced plant genomes of Arabidopsis, Populus and rice. Here, we identified miRNAs from leaves, roots, stems and flowers at different developmental stages of the basal eudicot species Eschscholzia californica (California poppy) using cloning and capillary sequencing, as well as ultrahigh-throughput pyrosequencing using the recently introduced 454 sequencing method. In total, we identified a minimum of 173 unique miRNA sequences belonging to 28 miRNA families and seven trans-acting small interfering RNAs (ta-siRNAs) conserved in eudicot and monocot species. miR529 and miR537, which have not yet been reported in eudicot species, were detected in California poppy; loci encoding these miRNAs were also found in Arabidopsis and Populus. miR535, which occurs in the moss Physcomitrella patens, was also detected in California poppy, but not in other angiosperms. Several potential miRNA targets were found in cDNA sequences of California poppy. Predicted target genes include transcription factors but also genes implicated in various metabolic processes and in stress defense. Comparative analysis of miRNAs from plants of phylogenetically-critical basal lineages aid the study of the evolutionary gains and losses of miRNAs in plants as well as their conservation, and lead to discoveries about the miRNAs of even well-studied model organisms.

DOI: 10.1111/j.1365-313X.2007.03197.x
PubMed: 17635767

Affiliations:

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Le document en format XML

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<term>Arabidopsis (metabolism)</term>
<term>Base Sequence (MeSH)</term>
<term>Cloning, Molecular (MeSH)</term>
<term>Conserved Sequence (MeSH)</term>
<term>Eschscholzia (genetics)</term>
<term>Eschscholzia (metabolism)</term>
<term>Flowers (genetics)</term>
<term>Flowers (metabolism)</term>
<term>Magnoliopsida (genetics)</term>
<term>Magnoliopsida (metabolism)</term>
<term>MicroRNAs (classification)</term>
<term>MicroRNAs (genetics)</term>
<term>MicroRNAs (metabolism)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (metabolism)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Roots (metabolism)</term>
<term>Plant Stems (genetics)</term>
<term>Plant Stems (metabolism)</term>
<term>Populus (genetics)</term>
<term>Populus (metabolism)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
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<term>Arabidopsis (génétique)</term>
<term>Arabidopsis (métabolisme)</term>
<term>Clonage moléculaire (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Eschscholzia (génétique)</term>
<term>Eschscholzia (métabolisme)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (métabolisme)</term>
<term>Fleurs (génétique)</term>
<term>Fleurs (métabolisme)</term>
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<term>Racines de plante (génétique)</term>
<term>Racines de plante (métabolisme)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence nucléotidique (MeSH)</term>
<term>Tiges de plante (génétique)</term>
<term>Tiges de plante (métabolisme)</term>
<term>microARN (classification)</term>
<term>microARN (génétique)</term>
<term>microARN (métabolisme)</term>
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<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>MicroRNAs</term>
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<term>Eschscholzia</term>
<term>Flowers</term>
<term>Magnoliopsida</term>
<term>MicroRNAs</term>
<term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term>
<term>Eschscholzia</term>
<term>Feuilles de plante</term>
<term>Fleurs</term>
<term>Magnoliopsida</term>
<term>Populus</term>
<term>Racines de plante</term>
<term>Tiges de plante</term>
<term>microARN</term>
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<term>Magnoliopsida</term>
<term>MicroRNAs</term>
<term>Plant Leaves</term>
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<term>Plant Stems</term>
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<term>Feuilles de plante</term>
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<term>Conserved Sequence</term>
<term>Molecular Sequence Data</term>
<term>Sequence Analysis, RNA</term>
</keywords>
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<term>Clonage moléculaire</term>
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<front><div type="abstract" xml:lang="en">MicroRNAs (miRNAs) negatively control gene expression by cleaving or inhibiting the translation of mRNA of target genes, and as such, they play an important role in plant development. Of the 79 plant miRNA families discovered to date, most are from the fully sequenced plant genomes of Arabidopsis, Populus and rice. Here, we identified miRNAs from leaves, roots, stems and flowers at different developmental stages of the basal eudicot species Eschscholzia californica (California poppy) using cloning and capillary sequencing, as well as ultrahigh-throughput pyrosequencing using the recently introduced 454 sequencing method. In total, we identified a minimum of 173 unique miRNA sequences belonging to 28 miRNA families and seven trans-acting small interfering RNAs (ta-siRNAs) conserved in eudicot and monocot species. miR529 and miR537, which have not yet been reported in eudicot species, were detected in California poppy; loci encoding these miRNAs were also found in Arabidopsis and Populus. miR535, which occurs in the moss Physcomitrella patens, was also detected in California poppy, but not in other angiosperms. Several potential miRNA targets were found in cDNA sequences of California poppy. Predicted target genes include transcription factors but also genes implicated in various metabolic processes and in stress defense. Comparative analysis of miRNAs from plants of phylogenetically-critical basal lineages aid the study of the evolutionary gains and losses of miRNAs in plants as well as their conservation, and lead to discoveries about the miRNAs of even well-studied model organisms.</div>
</front>
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<Abstract><AbstractText>MicroRNAs (miRNAs) negatively control gene expression by cleaving or inhibiting the translation of mRNA of target genes, and as such, they play an important role in plant development. Of the 79 plant miRNA families discovered to date, most are from the fully sequenced plant genomes of Arabidopsis, Populus and rice. Here, we identified miRNAs from leaves, roots, stems and flowers at different developmental stages of the basal eudicot species Eschscholzia californica (California poppy) using cloning and capillary sequencing, as well as ultrahigh-throughput pyrosequencing using the recently introduced 454 sequencing method. In total, we identified a minimum of 173 unique miRNA sequences belonging to 28 miRNA families and seven trans-acting small interfering RNAs (ta-siRNAs) conserved in eudicot and monocot species. miR529 and miR537, which have not yet been reported in eudicot species, were detected in California poppy; loci encoding these miRNAs were also found in Arabidopsis and Populus. miR535, which occurs in the moss Physcomitrella patens, was also detected in California poppy, but not in other angiosperms. Several potential miRNA targets were found in cDNA sequences of California poppy. Predicted target genes include transcription factors but also genes implicated in various metabolic processes and in stress defense. Comparative analysis of miRNAs from plants of phylogenetically-critical basal lineages aid the study of the evolutionary gains and losses of miRNAs in plants as well as their conservation, and lead to discoveries about the miRNAs of even well-studied model organisms.</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Barakat</LastName>
<ForeName>Abdelali</ForeName>
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<Author ValidYN="Y"><LastName>Wall</LastName>
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<Author ValidYN="Y"><LastName>Leebens-Mack</LastName>
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<Author ValidYN="Y"><LastName>Carlson</LastName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName>
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<name sortKey="Leebens Mack, Jim" sort="Leebens Mack, Jim" uniqKey="Leebens Mack J" first="Jim" last="Leebens-Mack">Jim Leebens-Mack</name>
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Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.

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Descripteurs français

English descriptors

Abstract

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